Davy Jones appearas as a stick figure with a lobster claw for a right hand, as well as a face with a beard of writhing tentacles with a pirate hat on his head. In T3H Metroid Galaxy 2, he also has a tentacle moustache, but because Pirates of the Caribbean's version of Davy Jones does not have one, this was later removed.
Davy Jones only appears in the twelve-page "sequel", T3H Metroid Galaxy 2. He says that Samus owes him her soul for rebuilding her ship, the Hunter. He owns a large spaceship called the Flying Dutchman II, which can also travel on water. He has an army of minions who appear as stick figures with a large central eye and no other facial features. He also has a "pet", the Kraken, which is an enormous giant squid/octopus. He is destroyed when Samus destroys his heart. However, he will reappear in T3H Zelda Galaxy as a much more main character.
Davy Jones attacks the King of Red Lions with the Kraken, which looks much different (it now looks more like its Pirates of the Caribbean counterpart). He later captures the Writer and enslaves him aboard his ship. He imitates many of his Pirates of the Caribbean counterpart's actions, such as lighting a pipe with his beard tentacles, announcing the reuinion between two characters who are enslaved to him (in this case, the Writer and Dracog), playing his theme song on a pipe organ, and not being able to step on land for ten years.