The following is a list of issues in T3H Metroid Galaxy, season 2.
| 11 | "A New Adventure" |
| 12 | "The Writer" |
| 13 | "Deja Vu" |
| 14 | "Don't Call Me Shirley" |
| 15 | "Bowling for Thardus" |
| 16 | "Phazon" |
| 17 | "Omega Pirate" |
| 18 | "Temples" |
| 19 | "Metroid Prime" |
| 20 | "Escape Again" |
The second season of T3H Metroid Galaxy has Samus and Oveur crash land on Tallon IV, where they must fight off the natural wildlife, defeat Ridley once again, avoid the mysterious substance Phazon, and escape the planet. The season culminates with a battle against Metroid Prime, who is actually the evil Dark Samus.